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Ontology services from NCBO

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Ontology Web Services from the National Center for Biomedical OntologyMark Musen and Nigam Shah{musen, nigam}@stanford.edu• www.bioontology.org/wiki/index.php/Tutorial_Examples• www.bioontology.org/wiki/index.php/NCBO_REST_servicesNCBO: Key activities• We create and maintain a library of biomedical ontologies.• We build tools andW eb services to enable the use of ontologies and their derivatives.• We collaborate with scientific communities that develop and use ontologies.www.bioontology.orgGo to BioPortal5Total Monthly Visits to BioPortalPART-I• DownloadOntology • TraverseServices• Search• CommentViews• CreateMapping • DownloadServices• Upload• Tree-view• Auto-completeWidgets• Graph-viewAnnotation Term recognitionFetch “data” annotated with a Data Accessgiven termhttp://bioportal.bioontology.orghttp://rest.bioontology.orgONTOLOGY SERVICESAccessing, browsing, searching and traversing ontologies Yionur applicationwww.bioontology.org/wiki/index.php/NCBO_REST_services11Code Specific UIhttp://rest.bioontology.org/>http://rest.bioontology.org/bioportal/ontologieshttp://rest.bioontology.org/bioportal/search/melanoma/?ontologyids=1351http://rest.bioontology.org/bioportal/virtual/ontology/1351/D008545Wikipathways uses Ontology ServicesBiositemaps EditorVIEWSCustom subsets of large ontologiesViews and Value Sets• Users can contribute their derivatives of BioPortal ontologies, • which become first-class objects in ...
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Ontology Web Services from the National Center for Biomedical Ontology
Mark Musen and Nigam Shah
{musen, nigam}@stanford.edu
www.bioontology.org/wiki/index.php/Tutorial Examples _
www.bioontology.org/wiki/index.php/NCBO_REST_services
NCB
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We create and maintain a library of biomedical ontologies.
We build  tools and Web services to enable the use of ontologies and their derivatives.
We collaborate with scientific communities  that develop and use ontologies.
www.bioontology.org
Go to BioPortal
5
PART-I
Ontology Services Views
Mapping Services
Widgets
Annotation
Data Access
Download Traverse Search Comment
Create Download Upload
Tree-view Auto-complete Graph-view
Term recognition
Fetch “data” annotated with a given term
http://bioportal.bioontology.org
ONTOLOGY SERVICES
Accessing, browsing, searching and traversing ontologies in Your  application
www.bioontology.org/wiki/index.php/NCBO REST services _ _
11
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