Ontology services from NCBO

Shah, Nigam

Description

Ontology Web Services from the National Center for Biomedical OntologyMark Musen and Nigam Shah{musen, nigam}@stanford.edu• www.bioontology.org/wiki/index.php/Tutorial_Examples• www.bioontology.org/wiki/index.php/NCBO_REST_servicesNCBO: Key activities• We create and maintain a library of biomedical ontologies.• We build tools andW eb services to enable the use of ontologies and their derivatives.• We collaborate with scientific communities that develop and use ontologies.www.bioontology.orgGo to BioPortal5Total Monthly Visits to BioPortalPART-I• DownloadOntology • TraverseServices• Search• CommentViews• CreateMapping • DownloadServices• Upload• Tree-view• Auto-completeWidgets• Graph-viewAnnotation Term recognitionFetch “data” annotated with a Data Accessgiven termhttp://bioportal.bioontology.orghttp://rest.bioontology.orgONTOLOGY SERVICESAccessing, browsing, searching and traversing ontologies Yionur applicationwww.bioontology.org/wiki/index.php/NCBO_REST_services11Code Specific UIhttp://rest.bioontology.org/>http://rest.bioontology.org/bioportal/ontologieshttp://rest.bioontology.org/bioportal/search/melanoma/?ontologyids=1351http://rest.bioontology.org/bioportal/virtual/ontology/1351/D008545Wikipathways uses Ontology ServicesBiositemaps EditorVIEWSCustom subsets of large ontologiesViews and Value Sets• Users can contribute their derivatives of BioPortal ontologies, • which become first-class objects in ...

Sujets

• National Center for Biotechnology Information

Informations

• Publié par: mtoledan
• Publié le: 28 juillet 2011
• Nombre de lectures: 119
• Langue: English
• Poids de l'ouvrage: 12 Mo

Extrait

Ontology Web Services from the National Center for Biomedical Ontology

Mark Musen and Nigam Shah

{musen, nigam}@stanford.edu

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www.bioontology.org/wiki/index.php/Tutorial Examples _

www.bioontology.org/wiki/index.php/NCBO_REST_services

NCB

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We create and maintain a library of biomedical ontologies.

We build   tools and Web services to enable the use of ontologies and their derivatives.

We collaborate with scientific communities   that develop and use ontologies.

www.bioontology.org

Go to BioPortal

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PART-I

Ontology Services Views

Mapping Services

Widgets

Annotation

Data Access

• Download • Traverse • Search • Comment

• Create • Download • Upload

• Tree-view • Auto-complete • Graph-view

Term recognition

Fetch “data” annotated with a given term

http://bioportal.bioontology.org

ONTOLOGY SERVICES

Accessing, browsing, searching and traversing ontologies in Your   application

www.bioontology.org/wiki/index.php/NCBO REST services _ _

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