Correlation between Composition and Site specific Evolutionary Rate and Implications for Phylogenetic Inference

Magnus Rattray

Description

Correlation between composition and site-specific evolutionary rate and implications for phylogenetic inference nonhomogeneous RNA models Vivek Gowri-Shankar, Magnus Rattray , School of Computer Science - University of Manchester nonhomogeneous RNA models

• nonhomogeneous rna


• tree time-homogeneity


• single-stranded chains


• site-specific evolutionary


• gowri-shankar


• compositional heterogeneity across


• gorilla barbary


• watson?crick pairs

Sujets

• Rattray

Informations

• Publié par: pefav
• Nombre de lectures: 23
• Langue: English

Extrait

Correlationbetweencomposition a a n n d di si m te p - li s c p a e ti c o i n c sf e o v r ol p u h ti y o lo n g a e ry ne r t a i t c e inference nonhomogeneousRNAmodels VivekGowri-Shankar,MagnusRattray [e-mail],[e-mail] SchoolofComputerScience-UniversityofManchester nonhomogeneousRNAmodels

Background:RNAgenes Single-strandedchainsofnucleotides(A,C,G,U) Somecomplementaryregions(A:U,G:Cpairs) ⇒ folding Watson−Crick pairs U−G pairs Mismatch A GU C G A U A U AC GC G A U U GA U A UC GA U C U A UA AA C metS Secondarystructure pooL 23Stertiarystructure nonhomogeneousRNAmodesl