Quantifying the Equilibrium and Irreversibility Properties of the Nucleotide Substitution Process

Federico Squartini

Description

Quantifying the Equilibrium and Irreversibility Properties of the Nucleotide Substitution Process Federico Squartini and Peter. F. Arndt Max Planck Institute for Molecular Genetics Quantifying the Equilibrium and Irreversibility Properties of the Nucleotide Substitution Process – p.1

• irreversibility properties


• qac qag


• markovian sequence


• qcg qct


• nucleotide substitution models


• initial condition


• qtg ·


• nucleotide substitution


• qta qtc

Sujets

• Planck
• Initial value problem

Informations

• Publié par: pefav
• Nombre de lectures: 13
• Langue: English
• Poids de l'ouvrage: 2 Mo

Extrait

Pro Q p u e a r n t t i i e f s yi o n f g t t h h e e N E u q c u l i e li o b ti ri d u e m Su a b n s d ti I t rr u e ti v o e n rs P i r b o il c it e y ss FedericoSquartiniandPeter.F.Arndt MaxPlanckInstituteforMolecularGenetics QautnifiygntehqEiulirbimunadIrrvereisiblityrPporetisefotehNculoetieduSsbtittuinorPcoses–.p1

Welliwtalkaboutdisequilibrium irreversibility... QautnifiygntehqEiulirbimunadIrrvereisiblityrPporetisefoteh dna NculoetieduSsbtittuinoPrcoses–.p2

MarkovianSequenceEvolution Nucleotidesubstitutionmodels:i.i.dMarkovmodelsofevolution,i.e.a masterequation: ∂ X ∂t ρ β ( t )= α Q βα ρ α ( t ) A G QautnifiygntehE α,β ∈{ A , G , C , T } T C uqilirbimunadIrrvereisiblityrPporetisefotehNculoetieduSsbtittuinorPcoses–.p3