EMORY UNIVERSITY DEPARTMENT OF MATHEMATICS AND COMPUTER SCIENCE

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Version 1 Page 1 EMORY UNIVERSITY DEPARTMENT OF MATHEMATICS AND COMPUTER SCIENCE MATH 107(00C) Midterm Test _2 Instructor: Hasan PALTA July 28th, 2010 Group: A

sample of 300 deer
probability values
scores for a test
random for a mosquito count
percentage scores
percentage of scores
student guesses at random
102.2 mosquitoes per square meter
square meters
student

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1. 2. 3. 4. 5. 6. 7. 8. 9.

Introduction Molecular Architecture I Molecular Architecture II Molecular Simulation I Molecular Simulation II Bioinformatics I Bioinformatics II Prediction I Prediction II

1. 2. 3. 4. 5. 6. 7. 8. 9.

18. 19. 20. 21. 22. 23. 24. 25. 26. 27.

43. 44. 45. 46. 47. 48. 49. 50. 51. 52. 53. 54. 55. 56.

Levitt SB 228 Syllabus

ALL LECTURES IN SB228

1. Introduction1.1. Principles of Biology 1.2. Structure is Central SB228 Lecture 1 Lecture1 10. Structure is Central. Concept 1.2 Principles of Biology. Concept 1.1 11. Structure is Central Principles of Biology 12. Cellular Cities The Cycle of Life 13. Membrane Dynamics Structural Overview of Biology 14. Enzymes Catalyze Reactions Informatics Overview of Biology 15. The Core Machinery of Life Spontaneous SelfOrganization 16. Drug Binding to Receptor Energy Landscapes 17. Fibrous Proteins in Disease What Drives Folding 1.3. Protein Images 1.4. Fundamental interactions 28. Fundamental interactions. Concept 1.4 29. Fundamental interactions 30. What is an atom Protein Images. Concept 1.3 31. What is a Molecule What Does a Protein Look Like 32. Forces Between atoms Protein in Water 33. Total Potential Energy See the Protein alone 34. Bond Stretching See the Bonded atoms 35. Bond angle Bending Try to See the Main Chain 1 36. Bond Twisting Try to See the Main Chain 2 37. Van Der Waals interaction Try to See the Main Chain 3 38. Electrostatics interaction Try to See the Chain Path 39. Hydrogen Bonds 1 For Function Show Surface 40. Hydrogen Bonds 2 41. Water Energy and Dipole 42. Units in Force Fields 1.5. Complex interactions 1.6. Useful tools

Complex interactions. Concept 1.5 Complex interactions Moving Over Energy Surface Simulating Crystals Simulating Liquids Liquids argon and Water Solutions Urea Solutions Methane Hydrophobic Effect Explaining Hydrophobicity Explaining the Dielectric Effect Energy and Springs 1 Energy and Springs 2 Strength of interactions

57. 58. 59. 60. 61. 62. 63. 64. 65. 66. 67.

Useful tools. Concept 1.6 Useful tools Web Searching Google Web Searching Pubmed Molecular Graphics 1 Basic Molecular Graphics Molecular Graphics Rasmol Molecular Graphics Pymol Movie of Pymol Demonstration Molecular Graphics Others Capturing Pictures

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